GUDMAP1/GUDMAP2/nGUDMAP: Annotation Tool checking protocols (Version 1.0)

Version

1.0

Notice

This page is the corresponding protocol tomestone page generated as part of the ATLAS-D2K shutdown in July 2025. Many links on this page may be broken.

Authors

Richard Baldock

Release Date

2017-09-19

Abstract

This protocol describes methods used by the Editorial Office in the University of Edinburgh for checking annotations in GUDMAP1, GUDMAP2 and nGUDMAP.

Procedure

The Annotation Tool is a graphical interface that allows users to add expression strengths, patterns/locations, and notes to their submissions. These temporary submissions will contain all annotation data but not metadata such as probe details, submitter details etc which are to be submitted using the submission spreadsheet. For submissions sent using the Annotation Tool the EO perform the following checks:

• Check that the temporary GUDMAP IDs match those in the submitted spreadsheet.
• Check the sex of the specimen and if necessary revise the online annotation.
• Check the Theiler stage to ensure that it matches that specified in the submitted spreadsheet.
• In addition the EO checks the accompanying spreadsheet.

Consortium

GenitoUrinary Development Molecular Anatomy Project (GUDMAP) Consortium