DatasetBag Class
THis module defines the DataSet class with is used to manipulate n
DatasetHistory
Bases: BaseModel
Class representing a dataset history.
Attributes:
Name | Type | Description |
---|---|---|
dataset_version |
DatasetVersion
|
A DatasetVersion object which captures the semantic versioning of the dataset. |
dataset_rid |
RID
|
The RID of the dataset. |
version_rid |
RID
|
The RID of the version record for the dataset in the Dataset_Version table. |
minid |
str
|
The URL that represents the handle of the dataset bag. This will be None if a MINID has not been created yet. |
snapshot |
str
|
Catalog snapshot ID of when the version record was created. |
Source code in src/deriva_ml/dataset/aux_classes.py
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DatasetMinid
Bases: BaseModel
Represent information about a MINID that refers to a dataset
Attributes:
Name | Type | Description |
---|---|---|
dataset_version |
DatasetVersion
|
A DatasetVersion object which captures the semantic versioning of the dataset. |
metadata |
dict
|
A dictionary containing metadata from the MINID landing page. |
minid |
str
|
The URL that represents the handle of the MINID associated with the dataset. |
bag_url |
str
|
The URL to the dataset bag |
identifier |
str
|
The identifier of the MINID in CURI form |
landing_page |
str
|
The URL to the landing page of the MINID |
version_rid |
str
|
RID of the dataset version. |
checksum |
str
|
The checksum of the MINID in SHA256 form |
Source code in src/deriva_ml/dataset/aux_classes.py
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DatasetSpec
Bases: BaseModel
Represent a dataset_table in an execution configuration dataset_table list
Attributes:
Name | Type | Description |
---|---|---|
rid |
RID
|
A dataset_table RID |
materialize |
bool
|
If False do not materialize datasets, only download table data, no assets. Defaults to True |
version |
DatasetVersion
|
The version of the dataset. Should follow semantic versioning. |
Source code in src/deriva_ml/dataset/aux_classes.py
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DatasetVersion
Bases: Version
Represent the version associated with a dataset using semantic versioning.
Methods:
Name | Description |
---|---|
replace |
Replace the major and minor versions |
Source code in src/deriva_ml/dataset/aux_classes.py
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|
build
property
writable
build: Optional[str]
The build part of a version (read-only).
major
property
writable
major: int
The major part of a version (read-only).
minor
property
writable
minor: int
The minor part of a version (read-only).
patch
property
writable
patch: int
The patch part of a version (read-only).
prerelease
property
writable
prerelease: Optional[str]
The prerelease part of a version (read-only).
__getitem__
__getitem__(
index: Union[int, slice],
) -> Union[
int,
Optional[str],
Tuple[Union[int, str], ...],
]
self.getitem(index) <==> self[index] Implement getitem.
If the part requested is undefined, or a part of the range requested is undefined, it will throw an index error. Negative indices are not supported.
:param index: a positive integer indicating the
offset or a :func:slice
object
:raises IndexError: if index is beyond the range or a part is None
:return: the requested part of the version at position index
ver = semver.Version.parse("3.4.5") ver[0], ver[1], ver[2] (3, 4, 5)
Source code in semver/version.py
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__init__
__init__(
major: SupportsInt,
minor: SupportsInt = 0,
patch: SupportsInt = 0,
)
Initialize a DatasetVersion object.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
major
|
SupportsInt
|
Major version number. Used to indicate schema changes. |
required |
minor
|
SupportsInt
|
Minor version number. Used to indicate additional members added, or change in member values. |
0
|
patch
|
SupportsInt
|
Patch number of the dataset. Used to indicate minor clean-up and edits |
0
|
Source code in src/deriva_ml/dataset/aux_classes.py
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__iter__
__iter__() -> VersionIterator
Return iter(self).
Source code in semver/version.py
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bump_build
bump_build(
token: Optional[str] = "build",
) -> Version
Raise the build part of the version, return a new object but leave self untouched.
:param token: defaults to 'build'
:return: new :class:Version
object with the raised build part.
The original object is not modified.
ver = semver.parse("3.4.5-rc.1+build.9") ver.bump_build() Version(major=3, minor=4, patch=5, prerelease='rc.1', build='build.10')
Source code in semver/version.py
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|
bump_major
bump_major() -> Version
Raise the major part of the version, return a new object but leave self untouched.
:return: new object with the raised major part
ver = semver.parse("3.4.5") ver.bump_major() Version(major=4, minor=0, patch=0, prerelease=None, build=None)
Source code in semver/version.py
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|
bump_minor
bump_minor() -> Version
Raise the minor part of the version, return a new object but leave self untouched.
:return: new object with the raised minor part
ver = semver.parse("3.4.5") ver.bump_minor() Version(major=3, minor=5, patch=0, prerelease=None, build=None)
Source code in semver/version.py
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|
bump_patch
bump_patch() -> Version
Raise the patch part of the version, return a new object but leave self untouched.
:return: new object with the raised patch part
ver = semver.parse("3.4.5") ver.bump_patch() Version(major=3, minor=4, patch=6, prerelease=None, build=None)
Source code in semver/version.py
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|
bump_prerelease
bump_prerelease(
token: Optional[str] = "rc",
) -> Version
Raise the prerelease part of the version, return a new object but leave self untouched.
:param token: defaults to 'rc'
:return: new :class:Version
object with the raised prerelease part.
The original object is not modified.
ver = semver.parse("3.4.5") ver.bump_prerelease().prerelease 'rc.2' ver.bump_prerelease('').prerelease '1' ver.bump_prerelease(None).prerelease 'rc.1'
Source code in semver/version.py
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compare
compare(other: Comparable) -> int
Compare self with other.
:param other: the second version :return: The return value is negative if ver1 < ver2, zero if ver1 == ver2 and strictly positive if ver1 > ver2
Version.parse("1.0.0").compare("2.0.0") -1 Version.parse("2.0.0").compare("1.0.0") 1 Version.parse("2.0.0").compare("2.0.0") 0
Source code in semver/version.py
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finalize_version
finalize_version() -> Version
Remove any prerelease and build metadata from the version.
:return: a new instance with the finalized version string
str(semver.Version.parse('1.2.3-rc.5').finalize_version()) '1.2.3'
Source code in semver/version.py
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is_compatible
is_compatible(other: Version) -> bool
Check if current version is compatible with other version.
The result is True, if either of the following is true:
- both versions are equal, or
- both majors are equal and higher than 0. Same for both minors. Both pre-releases are equal, or
- both majors are equal and higher than 0. The minor of b's minor version is higher then a's. Both pre-releases are equal.
The algorithm does not check patches.
.. versionadded:: 3.0.0
:param other: the version to check for compatibility
:return: True, if other
is compatible with the old version,
otherwise False
Version(1, 1, 0).is_compatible(Version(1, 0, 0)) False Version(1, 0, 0).is_compatible(Version(1, 1, 0)) True
Source code in semver/version.py
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is_valid
classmethod
is_valid(version: str) -> bool
Check if the string is a valid semver version.
.. versionadded:: 2.9.1
.. versionchanged:: 3.0.0
Renamed from :meth:~semver.version.Version.isvalid
:param version: the version string to check :return: True if the version string is a valid semver version, False otherwise.
Source code in semver/version.py
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match
match(match_expr: str) -> bool
Compare self to match a match expression.
:param match_expr: optional operator and version; valid operators are
<
smaller than
>
greater than
>=
greator or equal than
<=
smaller or equal than
==
equal
!=
not equal
:return: True if the expression matches the version, otherwise False
semver.Version.parse("2.0.0").match(">=1.0.0") True semver.Version.parse("1.0.0").match(">1.0.0") False semver.Version.parse("4.0.4").match("4.0.4") True
Source code in semver/version.py
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next_version
next_version(
part: str,
prerelease_token: str = "rc",
) -> Version
Determines next version, preserving natural order.
.. versionadded:: 2.10.0
This function is taking prereleases into account.
The "major", "minor", and "patch" raises the respective parts like
the bump_*
functions. The real difference is using the
"prerelease" part. It gives you the next patch version of the
prerelease, for example:
str(semver.parse("0.1.4").next_version("prerelease")) '0.1.5-rc.1'
:param part: One of "major", "minor", "patch", or "prerelease" :param prerelease_token: prefix string of prerelease, defaults to 'rc' :return: new object with the appropriate part raised
Source code in semver/version.py
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replace
replace(
**parts: Union[int, Optional[str]],
) -> Version
Replace one or more parts of a version and return a new :class:Version
object, but leave self untouched.
.. versionadded:: 2.9.0
Added :func:Version.replace
:param parts: the parts to be updated. Valid keys are:
major
, minor
, patch
, prerelease
, or build
:return: the new :class:~semver.version.Version
object with
the changed parts
:raises TypeError: if parts
contain invalid keys
Source code in semver/version.py
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to_dict
to_dict() -> dict[str, Any]
Returns:
Type | Description |
---|---|
dict[str, Any]
|
dictionary of version information |
Source code in src/deriva_ml/dataset/aux_classes.py
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to_tuple
to_tuple() -> tuple[int, int, int]
Returns:
Type | Description |
---|---|
tuple[int, int, int]
|
tuple of version information |
Source code in src/deriva_ml/dataset/aux_classes.py
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VersionPart
Bases: Enum
Simple enumeration for semantic versioning.
Attributes:
Name | Type | Description |
---|---|---|
major |
int
|
Major version number |
minor |
int
|
Minor version number |
patch |
int
|
Patch version number |
Source code in src/deriva_ml/dataset/aux_classes.py
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