Using ATLAS-D2K

Querying the ATLAS-D2K Data Browser Batch Querying Data Boolean Anatomy Search Exporting Data Policy for Accessing Human Sequencing Data

Submitting Data - Before You Begin

Accessing ATLAS-D2K Resources Standard file formats for data submission Curation Workflow Data submission curation state diagram Reviewing Data for Release

Submitting Data

Data Collections Sequencing and Multiomics Specimen and Imaging Antibodies and Antibody Validation Cell Lines Protocols Functional Assays Handbook Single Cell Visualization Files Register Human Adult Data with HRA

Citing Data

Create Citable Datasets Shortcut URLs for Citation and Sharing

Editing and Uploading Tools and Features

Bulk Upload with DERIVA Client Tools Bulk Uploading Images Advanced Editing Features Commandlines and Libraries Tips for Submitting Large or Complex Data

Reference

Educational tutorials FAQs Formatting with Markdown

Educational tutorials

What educational materials are available?

Our continually expanding Educational Tutorials are designed to help you understand the development of the GU tract, kidney and more. Use them to:

Better understand the anatomy ontology (see the Boolean Anatomy Query page and Little et al 2007)
Make informed queries using the database
Better understand the results returned from the database

To see our current offerings, go to https://www.atlas-d2k.org/tutorials/. You can also find it by going to www.atlas-d2k.org and clicking Education in the menu navigation.

Navigating to the Education section of the GUDMAP website

Current tutorials include:

Urogenital Development (Mouse) - Overview of urogenital development
- Development of the murine urinary system
- Development of the murine reproductive system
Kidney Development (Human and Mouse) - Overview of kidney development in mouse and human.
Prostate Development (Mouse) - Overview of prostate development
3D Penis Atlas (Mouse) - Detailed MRI data of the adult mouse penis