Using ATLAS-D2K

Using the ATLAS-D2K Data Browser Querying the ATLAS-D2K Data Browser Batch Querying Data Exporting Data Accessing Human Sequencing Data

Submitting Data - Before You Begin

Accessing ATLAS-D2K Resources Standard file formats for data submission Curation Workflow Data submission curation state diagram Reviewing Data for Release

Submitting Sequencing Records (For Omics data)

Submitting Sequencing Data Submitting Single Cell Visualization Files

Submitting Specimen Records (For imaging data - and metadata about bio-specimens)

Submitting Specimen Records Adding Specimen Records From a File (DRAFT) Annotating images Color palette for image annotation Thumbnail creation guideline Available Video Platforms

Submitting Other Resources

Antibodies Cell Lines Protocols Entries for the Functional Assay Handbook Data Collections Requirements for Creating Schematics

Citing Data

Create Citable Datasets Shortcut URLs for Citation and Sharing

Editing and Uploading Tools and Features

Advanced Editing Features Bulk Upload with DERIVA Client Tools Commandlines and Libraries Tips for Submitting Large or Complex Data

Reference

Educational tutorials FAQs Formatting with Markdown

Shortcut URLs for citation and sharing

The ATLAS-D2K data browser allows you to use “shortcut” URLs for easier (and better-looking) citation and sharing of any ATLAS-D2K record.

To use, make note of the RID for the record you want to cite or share. For example, if you want to share Steve Potter’s protocol for “Psychrophilic (Cold) protease dissociation of mouse kidney”, you would note the code in the RID field or column: N-H9DA.

To create the new URL, just use the following format:

https://www.atlas-d2k.org/id/<RID>

Which in this case would be:

https://www.atlas-d2k.org/id/N-H9DA

Note: The URL must use https:// and not http:// or the link will not work.