Using ATLAS-D2K

Using the ATLAS-D2K Data Browser Querying the ATLAS-D2K Data Browser Batch Querying Data Exporting Data Accessing Human Sequencing Data

Submitting Data - Before You Begin

Accessing ATLAS-D2K Resources Standard file formats for data submission Curation Workflow Data submission curation state diagram Reviewing Data for Release

Submitting Sequencing Records (For Omics data)

Submitting Sequencing Data Submitting Single Cell Visualization Files

Submitting Specimen Records (For imaging data - and metadata about bio-specimens)

Submitting Specimen Records Adding Specimen Records From a File (DRAFT) Annotating images Color palette for image annotation Thumbnail creation guideline Available Video Platforms

Submitting Other Resources

Antibodies Cell Lines Protocols Entries for the Functional Assay Handbook Data Collections Requirements for Creating Schematics

Citing Data

Create Citable Datasets Shortcut URLs for Citation and Sharing

Editing and Uploading Tools and Features

Advanced Editing Features Bulk Upload with DERIVA Client Tools Commandlines and Libraries Tips for Submitting Large or Complex Data

Reference

Educational tutorials FAQs Formatting with Markdown

Thumbnail creation guideline

Here is a brief guideline on how to create your thumbnail images.

General: The thumbnail should highlight the area of interest in your original image. It is usually displayed on the general search page to provide quick impression of the original images.
Resolution: Make the height and width of the thumbnail 150 pixels and around 72 dpi.
File format: png, jpeg (Note: These are browser supported image format)